gds Namespace Reference

Classes
class	bgenstream
struct	BoundDataStream
class	DataChunk
class	DataInfo
class	DataTable
class	DelayedStream
class	GenomicDataStream
class	GenomicRanges
class	MatrixInfo
struct	Param
class	pgenstream
struct	point
class	VariantInfo
class	VariantSet
class	vcfstream

Typedefs
typedef boost::tokenizer< boost::char_separator< char > >	tokenizer
typedef struct gds::BoundDataStream	BoundDataStream

Enumerations
enum	FileType {   VCF , VCFGZ , BCF , BGEN ,   PGEN , PBED , OTHER }

Functions
template<typename T>
std::vector< std::vector< T > >	chunk_vector (const std::vector< T > &vec, int k)

Typedef Documentation

BoundDataStream

typedef struct gds::BoundDataStream gds::BoundDataStream

tokenizer

typedef boost::tokenizer<boost::char_separator<char> > gds::tokenizer

Enumeration Type Documentation

FileType

enum gds::FileType

enum to indicate file type for genetics files

Enumerator
VCF
VCFGZ
BCF
BGEN
PGEN
PBED
OTHER

Function Documentation

chunk_vector()

template<typename T>

std::vector< std::vector< T > > gds::chunk_vector	(	const std::vector< T > &	vec,
		int	k )

Split vector into k chunks