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GenomicDataStream
A scalable interface between data and analysis
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This is the complete list of members for gds::DelayedStream, including all inherited members.
| DelayedStream(const shared_ptr< tatami::NumericMatrix > &ptr, const vector< string > &rowNames, const int &chunkSize) | gds::DelayedStream | inline |
| GenomicDataStream() | gds::GenomicDataStream | inline |
| GenomicDataStream(const Param ¶m) | gds::GenomicDataStream | inline |
| getChromRanges() override | gds::DelayedStream | inlinevirtual |
| getMAF() const | gds::GenomicDataStream | inline |
| getMinVariance() | gds::GenomicDataStream | inline |
| getNextChunk(DataChunk< arma::mat > &chunk, const bool &useFilter=true) override | gds::DelayedStream | inlinevirtual |
| getNextChunk(DataChunk< arma::sp_mat > &chunk, const bool &useFilter=true) override | gds::DelayedStream | inlinevirtual |
| getNextChunk(DataChunk< Eigen::MatrixXd > &chunk, const bool &useFilter=true) override | gds::DelayedStream | inlinevirtual |
| getNextChunk(DataChunk< Eigen::SparseMatrix< double > > &chunk, const bool &useFilter=true) override | gds::DelayedStream | inlinevirtual |
| getNextChunk(DataChunk< Rcpp::NumericMatrix > &chunk, const bool &useFilter=true) override | gds::DelayedStream | inlinevirtual |
| getNextChunk(DataChunk< vector< double > > &chunk, const bool &useFilter=true) override | gds::DelayedStream | inlinevirtual |
| getNextChunk(DataChunk< Eigen::MatrixXd > &chunk, int start, int len) | gds::DelayedStream | inline |
| getParam() const | gds::GenomicDataStream | inline |
| getSampleNames() override | gds::DelayedStream | inlinevirtual |
| getStreamType() override | gds::DelayedStream | inlinevirtual |
| n_rows() | gds::DelayedStream | inline |
| n_samples() override | gds::DelayedStream | inlinevirtual |
| param | gds::GenomicDataStream | protected |
| setChunkSize(const int &chunkSize) | gds::GenomicDataStream | inline |
| setMinVariance(const double &value) | gds::GenomicDataStream | inline |
| setRegions(const vector< string > ®ions) override | gds::DelayedStream | inlinevirtual |
| ~DelayedStream() | gds::DelayedStream | inline |
| ~GenomicDataStream() | gds::GenomicDataStream | inlinevirtual |