GenomicDataStream
A scalable interface between data and analysis
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gds::GenomicDataStream Member List

This is the complete list of members for gds::GenomicDataStream, including all inherited members.

GenomicDataStream()gds::GenomicDataStreaminline
GenomicDataStream(const Param &param)gds::GenomicDataStreaminline
getChromRanges()=0gds::GenomicDataStreampure virtual
getMAF() constgds::GenomicDataStreaminline
getMinVariance()gds::GenomicDataStreaminline
getNextChunk(DataChunk< arma::mat > &chunk, const bool &useFilter=true)=0gds::GenomicDataStreampure virtual
getNextChunk(DataChunk< arma::sp_mat > &chunk, const bool &useFilter=true)=0gds::GenomicDataStreampure virtual
getNextChunk(DataChunk< Eigen::MatrixXd > &chunk, const bool &useFilter=true)=0gds::GenomicDataStreampure virtual
getNextChunk(DataChunk< Eigen::SparseMatrix< double > > &chunk, const bool &useFilter=true)=0gds::GenomicDataStreampure virtual
getNextChunk(DataChunk< Rcpp::NumericMatrix > &chunk, const bool &useFilter=true)=0gds::GenomicDataStreampure virtual
getNextChunk(DataChunk< vector< double > > &chunk, const bool &useFilter=true)=0gds::GenomicDataStreampure virtual
getParam() constgds::GenomicDataStreaminline
getSampleNames()=0gds::GenomicDataStreampure virtual
getStreamType()=0gds::GenomicDataStreampure virtual
n_samples()=0gds::GenomicDataStreampure virtual
paramgds::GenomicDataStreamprotected
setChunkSize(const int &chunkSize)gds::GenomicDataStreaminline
setMinVariance(const double &value)gds::GenomicDataStreaminline
setRegions(const vector< string > &regions)=0gds::GenomicDataStreampure virtual
~GenomicDataStream()gds::GenomicDataStreaminlinevirtual
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