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zenith 0.99.12

  • update dependencies

zenith 0.99.10

  • replace recodeToList() since this functionality already exists

zenith 0.99.8

zenith 0.99.7

  • update plotZenithResults_gg()

zenith 0.99.6

  • add plotZenithResults_gg()

zenith 0.99.2

zenith 0.99.0

  • submit to BioC

zenith 1.0.7

  • update docs

zenith 1.0.6

zenith 1.0.5

  • bug fix in zenith() when progressbar=FALSE

zenith 1.0.3

zenith 1.0.2

  • flag to disable correlation in zenith()

zenith 1.0.1

  • improve documentation
  • get_GeneOntology() uses getGenesets(…,hierarchical=TRUE)

zenith 1.0.0

  • Improve documetation
  • fix bug with residuals

zenith 0.99.10

  • Upgrade t- MSigDB 7.2

zenith 0.99.10

  • Update documentation

zenith 0.99.9

  • zenith report error when squaredStats is TRUE

zenith 0.99.8

  • Much faster loading of cached gene sets
  • enforce:
  • variancePartition (>= 1.19.16)
  • EnrichmentBrowser (>= 2.19.13)

zenith 0.99.7

  • Enforce subsetting of residuals from MArrayLM

zenith 0.99.6

  • zenith() now returns effect size and standard error
  • if squaredStats==TRUE, return PValue = p.greater

zenith 0.99.5

  • Fix small error caused by fit$method

zenith 0.99.4

  • zenith uses t statistical for fixed effect models and z.std for mixed effects

zenith 0.99.3

  • zenith now works when dream uses random effects
  • more accurate time in progress bar