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Cell counts following interferon treatment

Source: R/data.R
IFNCellCounts.Rd

Counts are from single cell RNA-seq data from treated and untreated samples from (Kang et al. 2018) .

Usage

data(IFNCellCounts)

info

df_cellCounts

hcl

Format

  • info is metadata for each sample

  • df_cellCounts data.frame of counts for each sample

  • hcl cluster of cell types based on pseudobulk expression

An object of class data.frame with 16 rows and 4 columns.

An object of class matrix (inherits from array) with 16 rows and 8 columns.

An object of class hclust of length 7.

References

Kang HM, Subramaniam M, Targ S, Nguyen M, Maliskova L, McCarthy E, Wan E, Wong S, Byrnes L, Lanata CM, others (2018). “Multiplexed droplet single-cell RNA-sequencing using natural genetic variation.” Nature Biotechnology, 36(1), 89--94.