Function reference • crumblr

All functions

IFNCellCounts info df_cellCounts hcl: Cell counts following interferon treatment

buildClusterTree(): Perform hierarchical clustering on reducedDim

clr(): Centered log ratio transform

crumblr(): Count ratio uncertainty modeling based linear regression

diffTree(): Compare difference in estimates between two trees

dmn.mle(): MLE for Dirichlet Multinomial

meanSdPlot(): Plot row standard deviations versus rank of row means

plotForest(): Forest plot

plotScatterDensity(): Scatter plot with 2D density using viridis colors

plotTreeTest(): Plot tree with results from multivariate testing

plotTreeTestBeta(): Plot tree coefficients from multivariate testing

standardize(): Standardize observations using precision weights

treeTest(): Perform multivariate testing along a hierarchy