Perform hierarchical clustering dimension reduction from single cell expression data
Usage
buildClusterTree(
sce,
reduction,
labelCol,
method.dist = c("cosine", "euclidean", "maximum", "manhattan", "canberra", "binary",
"minkowski"),
method.hclust = c("complete", "ward.D", "ward.D2")
)
Arguments
- sce
SingleCellExperiment object
- reduction
field of reducedDims(sce) to use
- labelCol
column in SingleCellExperiment storing cell type annotations
- method.dist
method for dist(..,method=method.dist)
- method.hclust
method for hclust(..,method=method.hclust)
